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accession-icon GSE56609
Peripheral blood mononuclear cell gene expression pre-/post- acute metabolic challenge
  • organism-icon Homo sapiens
  • sample-icon 88 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Age

View Samples
accession-icon GSE56607
Peripheral blood mononuclear cell gene expression pre-/post- oral glucose challenge
  • organism-icon Homo sapiens
  • sample-icon 44 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

Acute metabolic challenges provide insight on how the body responds to metabolic stress. In this study, we assessed transcriptomic response in peripheral blood mononuclear cells (PBMC) to an acute glucose challenge.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Age

View Samples
accession-icon GSE56608
Peripheral blood mononuclear cell gene expression pre-/post- oral lipid challenge
  • organism-icon Homo sapiens
  • sample-icon 44 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

Acute metabolic challenges provide insight on how the body responds to metabolic stress. In this study, we assessed transcriptomic response in peripheral blood mononuclear cells (PBMC) to an acute lipid challenge.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Age

View Samples
accession-icon SRP040288
Homo sapiens strain:K562 Transcriptome or Gene expression
  • organism-icon Homo sapiens
  • sample-icon 96 Downloadable Samples
  • Technology Badge IconIlluminaHiSeq1000

Description

K562 single cell RNA-seq study

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon SRP067502
Homo sapiens Raw sequence reads
  • organism-icon Homo sapiens
  • sample-icon 591 Downloadable Samples
  • Technology Badge IconIlluminaHiSeq2000

Description

MicroRNA down-regulation and noise regulation

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon SRP013842
Homo sapiens Variation
  • organism-icon Homo sapiens
  • sample-icon 1 Downloadable Sample
  • Technology Badge IconIllumina HiSeq 2000

Description

This project aims to discover canonical gene fusion events from mixed human tissue cell lines.

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE14227
Time-course gene expression profiles of a Saccharomyces cerevisiae wild type and long-lived sch9-delta mutant
  • organism-icon Saccharomyces cerevisiae
  • sample-icon 19 Downloadable Samples
  • Technology Badge Icon Affymetrix Yeast Genome 2.0 Array (yeast2)

Description

The SCH9 null strain has smaller cell size, grows at a slower rate and survives three times longer than wide-type yeast.

Publication Title

Comparative analyses of time-course gene expression profiles of the long-lived sch9Delta mutant.

Sample Metadata Fields

Age

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accession-icon GSE13420
Significant and Systematic Expression Differentiation in Long-Lived Yeast Strains
  • organism-icon Saccharomyces cerevisiae
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Yeast Genome 2.0 Array (yeast2)

Description

The three yeast mutants sch9, ras2, tor1 show extended chronological life span up to three folds.

Publication Title

Significant and systematic expression differentiation in long-lived yeast strains.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE71766
A Systems Approach to Understanding Human Rhinovirus and Influenza Virus Infection
  • organism-icon Homo sapiens
  • sample-icon 186 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U219 Array (hgu219)

Description

Human rhinovirus and influenza virus infections of the upper airway lead to colds and the flu and can trigger exacerbations of lower airway diseases including asthma and chronic obstructive pulmonary disease. Despite modest advances in the diagnosis and treatment of infections by these viruses, novel diagnostic and therapeutic targets are still needed to differentiate between the cold and the flu, since the clinical course of influenza can be severe while that of rhinovirus is usually more mild.

Publication Title

A systems approach to understanding human rhinovirus and influenza virus infection.

Sample Metadata Fields

Time

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accession-icon GSE17170
A systems genetics approach implicates USF1, FADS3 and other causal candidate genes for familial combined hyperlipidemia
  • organism-icon Homo sapiens
  • sample-icon 68 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

Assessment of mRNA expression levels in fat biopsies from subcutaneous adipose tissue from unrelated individuals.

Publication Title

A systems genetics approach implicates USF1, FADS3, and other causal candidate genes for familial combined hyperlipidemia.

Sample Metadata Fields

Specimen part

View Samples
...

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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