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Sus scrofa
1 Downloadable Sample
Illumina HiSeq 2000
Description
The study of gene expression profiling of skeletal muscle between breeds.
Publication Title
No associated publication
Sample Metadata Fields
Sex, Age, Specimen part, Cell line
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SRP132125- Zea mays
- 7 Downloadable Samples
- Illumina HiSeq 2500
Description
To study the splicing factor role of ZmGRP1
Publication Title
No associated publication
Sample Metadata Fields
Sex, Specimen part, Disease, Disease stage, Cell line, Treatment
View Samples- Arabidopsis thaliana
- 6 Downloadable Samples
- Illumina HiSeq 2500
Description
Cuticular wax is a major composition of plant surface cuticle, which exerts crucial functions in optimizing plant growth. Histone acetylation regulates gene expression of diverse biological processes, but little is known about its role in cuticular wax synthesis. Here we observed that mutation of Arabidopsis histone acetyltransferase GCN5 gene impaired stem cuticular wax accumulation. Furthermore, three target genes of GCN5 (CER3, CER26 and CER1-L1) were identified by RNA-Seq and ChIP assays. Consistently, H3K9/14 acetylation levels in promoter regions of CER3, CER26 and CER1-L1 were significantly decreased in gcn5 as compared to wild type. Notably, overexpression of CER3 in the gcn5 mutant restored the stem cuticular wax accumulation. Collectively, these data demonstrate that Arabidopsis GCN5 is involved in stem cuticular wax accumulation by modulating CER3 expression via H3K9/14 acetylation, which present evidence that histone acetylation plays an important role in cuticular wax biosynthesis
Publication Title
No associated publication
Sample Metadata Fields
Specimen part
View Samples SRP015012- Gallus gallus
- 6 Downloadable Samples
- Illumina HiSeq 2000
Description
Using HiSeq2000 to sequence white leghorn different parts (ovary, magnum, isthmus and uterus) of oviduct at 40-weeks.
Publication Title
No associated publication
Sample Metadata Fields
No sample metadata fields
View Samples- Sus scrofa
- 2 Downloadable Samples
- Illumina HiSeq 2000
Description
Identification of candidate genes for drip loss
Publication Title
No associated publication
Sample Metadata Fields
Sex, Specimen part
View Samples- Mus musculus
- 1 Downloadable Sample
- Illumina HiSeq 2000
Description
Urechis unicinctus, a benthic marine worm inhabiting widely in the coast of Russia, Japan, Korean Peninsula and China, present special biological characteristics in morphology, reproductive and developmental biology as well as physiology. It could exist in condition of low oxygen, high sulfide and pollution where most animals could not live. However, the molecular mechanisms of resistance are still unknown and the main obstacle to further study is the limited genomic and genetic information. In order to improve the situation, we performed and acquired its transcriptome database.
Publication Title
No associated publication
Sample Metadata Fields
No sample metadata fields
View Samples- Sus scrofa
- 40 Downloadable Samples
Affymetrix Porcine Genome Array (porcine)
Description
Lymphocyte count is one of the lymphocyte phenotypes that are related or potentially related to the individual anti-virus capacity in pigs and other mammals. The aim of this work is to compare the transcriptome of the poly I:C-induced peripheral blood cells between pigs with extreme values of total lymphocyte count.The pigs with the two-tailed critical value of lymphopenia post 4h with poly I:C stimulation from a Duroc-Erhualian F2 population.
Publication Title
No associated publication
Sample Metadata Fields
Specimen part, Compound
View Samples- Sus scrofa
- 11 Downloadable Samples
- Affymetrix Porcine Genome Array (porcine)
Description
Neutrophils play a key role in the innate immunity and the first line of defense against invading pathogens. The aim of this work is to investigate the neutrophil responses and transcriptomic alteration in the porcine peripheral blood by employing Poly I:C to emulate viral infection. The pigs with the two-tailed critical value of neutrophilia post 4h with poly I:C stimulation from a Duroc-Erhualian F2 population.
Publication Title
No associated publication
Sample Metadata Fields
Age, Specimen part, Subject, Compound
View Samples- Gallus gallus
- 60 Downloadable Samples
- Affymetrix Chicken Gene 1.0 ST Array (chigene10st)
Description
We used a chicken RNA microarray to identify differentially expressed genes in order to compare two layer lines kept in a small group housing system Eurovent Deutsch.
Publication Title
No associated publication
Sample Metadata Fields
Specimen part
View Samples- Sus scrofa
- 3 Downloadable Samples
- Illumina Genome Analyzer II
Description
We first offered a comprehensive transcriptome from three pig adipose tissues (Hypodermal layer of backfat, greater omentum and mesenteric adipose tissue) by high-throughput RNA-Seq.
Publication Title
No associated publication
Sample Metadata Fields
Sex, Specimen part
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